pychromvar.compute_deviations

pychromvar.compute_deviations(data: AnnData | MuData, n_jobs=-1) → AnnData

Compute raw and bias-corrected deviations.

Parameters:

dataUnion[AnnData, MuData]

AnnData object with peak counts or MuData object with ‘atac’ modality.

n_jobsint, optional

Number of cpus used for motif matching. If set to -1, all cpus will be used. Default: -1.

Returns:

Anndata

An anndata object containing estimated deviations.