pychromvar.add_peak_seq

pychromvar.add_peak_seq(data: AnnData | MuData, genome_file: str, delimiter='-')

Add the DNA sequence of each peak to data object.

Parameters:

dataUnion[AnnData, MuData]

AnnData object with peak counts or MuData object with ‘atac’ modality.

genome_filestr

Filename of genome reference

delimiterstr, optional

Delimiter that separates peaks, by default “-”

Returns:

Update data