Welcome to pychromVAR’s documentation!

pychromVAR is a python package for inferring transcription factor binding variability from scATAC-seq data by implmenting the algorithm proposed in chromVAR. It is built on anndata and mudata therefore can work seamlessly with scanpy and muon pipeline.

For more methdological detials, please refer to the original paper.

Installation

pychromVAR requires Python version >= 3.8 to run.

PyPI

pychromVAR is also available on PyPI:

pip install pychromvar